Documents

Over the years, the JRC has produced many publications. These are found in this section. They have been sub-divided in various categories (see Subcategory buttons below). All more than 680 documents can also be inspected irrespective of the category (see 'All documents' below).

Publications in Journals include more than 490 published papers from the Soil Group in the JRC (EU Soil Observatory). Most of the papers refer to the last 11 years (2013-2024). In many cases the papers document the datasets published in ESDAC.

As example statistics, Since the establishement of the EUSO,  the group published:

  • 52 papers in 2025
  • 47 papers in 2024
  • 46 papers in 2023
  • 40 papers in 2022
  • 27 papers in 2021
  • 23 papers in 2020

 

Most of them in high impact journals including Nature Communicaitons, Climate Change, Global Change Biology, etc. Almost all the publications are Open Access. As publications, we present articles published in peer-review journals indexed in Scopus or Web of Science.

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A proposal for soil health indicators at EU level
A proposal for soil health indicators at EU level
Resource Type: Datasets, Maps & Documents, Documents, Scientific-Technical Reports
Year: 2024

Healthy soils are essential for our environment and society, as soils deliver crucial ecosystem services. The publication of the EU Soil Strategy for 2030 and the Soil Monitoring Law marked
major milestones for soil protection and restoration in the EU. In parallel, the Mission Soil aims to advance knowledge on healthy soils and establish 100 Living Labs and Lighthouses to co-create innovations for soil health. Contributing to a better EU soil health monitoring and a complete set of indicators at the EU-level are crucial components of the Mission Soil’s objectives. This report proposes a list of indicators for soil health in the EU, together with targets and thresholds for these indicators. Nineteen indicators are presented, representing the main soil degradation processes and monitoring the state of soil health at EU scale. The EUSO Soil Degradation Dashboard is proposed as the main platform for presenting these indicators, together with key results and statistics. The dashboards shows that, based on the proposed indicators, more than 60% of EU soils are currently unhealthy. Planned updates on the proposed indicator framework include: (i) refining, updating and adding new datasets for indicators, (ii) refining thresholds for the indicators, and (iii) developing a composite Soil Health Index. For these planned activities, close collaboration with the Mission Soil projects will be crucial.

Download the Report

Towards sustainable food systems: developing a monitoring framework for the EU
Towards sustainable food systems: developing a monitoring framework for the EU
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Adequate monitoring of the EU transition toward sustainable food systems can promote policy coherence and provide better evidence for informed policy making. This paper presents an initial concept and methodology for an EU food system monitoring framework, integrating a systems’ perspective and key sustainability elements relevant to the EU context. Grounded in scientific evidence and extensive dialogues among scientific experts with interdisciplinary backgrounds, we define an EU food system sustainability model that provides a conceptual framework for monitoring. This model encompasses 12 thematic areas and 37 indicator domains, synthetized through a rigorous review of existing frameworks and the assessment of nearly 250 relevant indicators via a transparent workflow and an integrated collaborative digital tool. We identify data gaps that signal challenges ahead in effective monitoring, but also opportunities for research and cooperation. To advance with an EU food system monitoring framework, it is essential to engage in participatory processes with stakeholders, ensuring an inclusive and transparent approach.

A unifying modelling of multiple land degradation pathways in Europe
A unifying modelling of multiple land degradation pathways in Europe
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Land degradation is a complex socio-environmental threat, which generally occurs as multiple concurrent pathways that remain largely unexplored in Europe. Here we present an unprecedented analysis of land multi-degradation in 40 continental countries, using twelve dataset-based processes that were modelled as land degradation convergence and combination pathways in Europe’s agricultural (and arable) environments. Using a Land Multi-degradation Index, we find that up to 27%, 35% and 22% of continental agricultural (~2 million km2) and arable (~1.1 million km2) lands are currently threatened by one, two, and three drivers of degradation, while 10–11% of pan-European agricultural/arable landscapes are cumulatively affected by four and at least five concurrent processes. We also explore the complex pattern of spatially interacting processes, emphasizing the major combinations of land degradation pathways across continental and national boundaries. Our results will enable policymakers to develop knowledge-based strategies for land degradation mitigation and other critical European sustainable development goals..

A unifying modelling of multiple land degradation pathways in Europe | Nature Communications

 

How the EU Soil Observatory is providing solid science for healthy soils
How the EU Soil Observatory is providing solid science for healthy soils
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Healthy soils are essential for sustainable food production, achieving climate neutrality and halting the loss of biodiversity. The European Commission turned the spotlights on these vital aspects of soils with the launch of the EU Soil Observatory (EUSO) in 2021 to support the European Green Deal. Also, the EU Soil Strategy for 2030 and the proposed Soil Monitoring Law marked a major milestone for soil protection. This article provides an overview of the functioning of the EUSO within this policy context. Through its activities, the EUSO supports an EU-wide soil monitoring system and provides policy support to a wide range of policy areas. Moreover, the EUSO monitors the state of soil health in the EU through the EUSO Soil Health Dashboard. This comprehensive and easy understandable tool shows, for the first time, where current scientific evidence converges to indicate areas in the EU likely to be affected by soil degradation. Furthermore, the EUSO supports soil research and innovation, enhances the capacity and functionality of the European Soil Data Centre and supports citizen engagements regarding soil matters. Overall, since 2021, the EUSO has successfully taken up its role to be the principal knowledge hub for soil information and data to underpin EU policy development and implementation. Also in the next years, EUSO will continue to provide data and knowledge to monitor, safeguard and restore soils in the EU.

How the EU Soil Observatory is providing solid science for healthy soils - Panagos - 2024 - European Journal of Soil Science - Wiley Online Library

Soil health is associated with higher primary productivity across Europe
Soil health is associated with higher primary productivity across Europe
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Soil health is expected to be of key importance for plant growth and ecosystem functioning. However, whether soil health is linked to primary productivity across environmental gradients and land-use types remains poorly understood. To address this gap, we conducted a pan-European field study including 588 sites from 27 countries to investigate the link between soil health and primary productivity across three major land-use types: woodlands, grasslands and croplands. We found that mean soil health (a composite index based on soil properties, biodiversity and plant disease control) in woodlands was 31.4% higher than in grasslands and 76.1% higher than in croplands. Soil health was positively linked to cropland and grassland productivity at the continental scale, whereas climate best explained woodland productivity. Among microbial diversity indicators, we observed a positive association between the richness of Acidobacteria, Firmicutes and Proteobacteria and primary productivity. Among microbial functional groups, we found that primary productivity in croplands and grasslands was positively related to nitrogen-fixing bacteria and mycorrhizal fungi and negatively related to plant pathogens. Together, our results point to the importance of soil biodiversity and soil health for maintaining primary productivity across contrasting land-use types.

Soil health is associated with higher primary productivity across Europe | Nature Ecology & Evolution

Cadmium in topsoils of the European Union–an analysis based on LUCAS topsoil database
Cadmium in topsoils of the European Union–an analysis based on LUCAS topsoil database
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024
Cadmium (Cd) is a naturally occurring element that can accumulate in the soil through the application of fertilisers containing cadmium and as a waste of industrial processes. Cadmium inputs in the soil have increased significantly (+50 %) during the 20th century as a result of the application of fertilisers and sewage sludge, and also due to local contamination (e.g. waste dumping, mining) and industrial emissions (e.g. zinc smelters).
Using the 21,682 soil samples from the LUCAS soil survey, we aim to estimate the spatial distribution of the concentration of Cd in the European Union (EU) and UK topsoil. Out of the total, 72.6 % of the samples have Cd values <0.07 mg kg−1, 21.6 % in the range 0.07–1 mg kg−1 and the remaining 5.5 % higher than the threshold of 1 mg kg−1, which is generally considered the limit for risk assessment. The mean Cd value in the EU topsoils is 0.20 mg kg−1, slightly higher in grasslands (0.24 mg kg−1) compared to croplands (0.17 mg kg−1).
Applying an ensemble of machine learning models supported by a variety of environmental descriptors, we created maps of Cd distribution at a resolution of 100 m. The ensemble approach included five models and increased the prediction accuracy to R2 of 0.45 (an increase of 0.1 compared to best single model performance). The approach used resulted in a high predictive power for the general Cd distribution, while also identifying hotspots of Cd contamination. Natural factors influencing Cd levels include soil properties (pH, clay), topography, soil erosion, and leaching. As anthropogenic factors, we identified phosphorus inputs to agricultural lands as the most important for Cd levels. The application of the EU Fertiliser Directive should further limit Cd inputs and potentially the Cd content in soils.
 
Fire effects on geomorphic processes
Fire effects on geomorphic processes
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Fire-induced geomorphic changes, such as enhanced erosion and debris-flow activity, are expected to increase with climate change owing to increases in fire activity and rainfall intensification. In this Review, we summarize how landscape attributes, rainfall and burn severity influence post-fire geomorphic responses over a range of temporal and spatial scales. Sub-hourly rainfall intensity and burn severity control the magnitude of many post-fire geomorphic process rates through their influence on ground cover and rainfall-runoff partitioning. Post-fire debris flows (PFDFs) make a substantial contribution to the post-fire sediment cascade, transporting sediment from hillslopes to channels, adjacent floodplains and alluvial fans. By the late twenty-first century, PFDF activity is estimated to increase in 68% of areas in which PFDFs have occurred in the past and decrease in only 2% of locations. Once altered by fire, geomorphic state variables — such as infiltration capacity, canopy cover, ground cover and sediment availability — can recover to their pre-fire value or be shifted to a new value. Improved understanding of the factors that influence these post-fire trajectories could support targeted management and intervention strategies. Additionally, monitoring that extends beyond the first 1–3 years after fire and deeper integration of ecohydrological processes into geomorphic models are needed to improve forecasts of post-fire geomorphic responses.

Fire effects on geomorphic processes | Nature Reviews Earth & Environment

Interaction effects of pH and land cover on soil microbial diversity are climate‐dependent
Interaction effects of pH and land cover on soil microbial diversity are climate‐dependent
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Factors regulating the diversity and composition of soil microbial communities include soil properties, land cover and climate. How these factors interact at large scale remains poorly investigated. Here, we used an extensive dataset including 715 locations from 24 European countries to investigate the interactive effects of climatic region, land cover and pH on soil bacteria and fungi. We found that differences in microbial diversity and community composition between land cover types depended on the climatic region. In Atlantic, Boreal and Continental regions, microbial richness was higher in croplands and grasslands than woodlands while richness in Mediterranean areas did not vary significantly among land cover types. These differences were further related to soil pH, as a driver of bacterial and fungal richness in most climatic regions, but the interaction of pH with land cover depended on the region. Microbial community composition differed the most between croplands and woodlands in all regions, mainly due to differences in pH. In the Mediterranean region, bacterial communities in woodlands and grasslands were the most similar, whereas in other regions, grassland and cropland-associated bacteria showed more similarity. Overall, we showed that key factors interact in shaping soil microbial communities in a climate-dependent way at large scale.

Environmental Microbiology: Vol 26, No 2

GloRESatE: A dataset for global rainfall erosivity derived from multi-source data
GloRESatE: A dataset for global rainfall erosivity derived from multi-source data
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Numerous hydrological applications, such as soil erosion estimation, water resource management, and rain driven damage assessment, demand accurate and reliable rainfall erosivity data. However, the scarcity of gauge rainfall records and the inherent uncertainty in satellite and reanalysis-based rainfall datasets limit rainfall erosivity assessment globally. Here, we present a new global rainfall erosivity dataset (0.1° × 0.1° spatial resolution) integrating satellite (CMORPH and IMERG) and reanalysis (ERA5-Land) derived rainfall erosivity estimates with gauge rainfall erosivity observations collected from approximately 6,200 locations across the globe. We used a machine learning-based Gaussian Process Regression (GPR) model to assimilate multi-source rainfall erosivity estimates alongside geoclimatic covariates to prepare a unified high-resolution mean annual rainfall erosivity product. It has been shown that the proposed rainfall erosivity product performs well during cross-validation with gauge records and inter-comparison with the existing global rainfall erosivity datasets. Furthermore, this dataset offers a new global rainfall erosivity perspective, addressing the limitations of existing datasets and facilitating large-scale hydrological modelling and soil erosion assessments.

GloRESatE: A dataset for global rainfall erosivity derived from multi-source data | Scientific Data

An assessment of global land susceptibility to wind erosion based on deep-active learning modelling and interpretation techniques
An assessment of global land susceptibility to wind erosion based on deep-active learning modelling and interpretation techniques
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Spatial accurate mapping of land susceptibility to wind erosion is necessary to mitigate its destructive consequences. In this research, for the first time, we developed a novel methodology based on deep learning (DL) and active learning (AL) models, their combination (e.g., recurrent neural network (RNN), RNN-AL, gated recurrent units (GRU), and GRU-AL) and three interpretation techniques (e.g., synergy matrix, SHapley Additive exPlanations (SHAP) decision plot, and accumulated local effects (ALE) plot) to map global land susceptibility to wind erosion. In this respect, 13 variables were explored as controlling factors to wind erosion, and eight of them (e.g., wind speed, topsoil carbon content, topsoil clay content, elevation, topsoil gravel fragment, precipitation, topsoil sand content and soil moisture) were selected as important factors via the Harris Hawk Optimization (HHO) feature selection algorithm. The four models were applied to map land susceptibility to wind erosion, and their performance was assessed by three measures consisting of area under of receiver operating characteristic (AUROC) curve, cumulative gain and Kolmogorov Smirnov (KS) statistic plots. The results revealed that GRU-AL model was considered as the most accurate, revealing that 38.5%, 12.6%, 10.3%, 12.5% and 26.1% of the global lands are grouped at very low, low, moderate, high and very high susceptibility classes to wind erosion hazard, respectively. Interpretation techniques were applied to interpret the contribution and impact of the eight input variables on the model’s output. Synergy plot revealed that the soil carbon content exhibited high synergy with DEM and soil moisture on the model’s predictions. ALE plot showed that soil carbon content and precipitation had negative feedback on the prediction of land susceptibility to wind erosion. Based on SHAP decision plot, soil moisture and DEM presented the highest contribution on the model’s output. Results highlighted new regions at high latitudes (southern Greenland coast, hotspots in Alaska and Siberia), which exhibited high and very high land susceptibility to wind erosion.

An assessment of global land susceptibility to wind erosion based on deep-active learning modelling and interpretation techniques | Scientific Reports

An integrated modeling approach for estimating monthly global rainfall erosivity
An integrated modeling approach for estimating monthly global rainfall erosivity
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Modeling monthly rainfall erosivity is vital to the optimization of measures to control soil erosion. Rain gauge data combined with satellite observations can aid in enhancing rainfall erosivity estimations. Here, we presented a framework which utilized Geographically Weighted Regression approach to model global monthly rainfall erosivity. The framework integrates long-term (2001–2020) mean annual rainfall erosivity estimates from IMERG (Global Precipitation Measurement (GPM) mission’s Integrated Multi-satellitE Retrievals for GPM) with station data from GloREDa (Global Rainfall Erosivity Database, n = 3,286 stations). The merged mean annual rainfall erosivity was disaggregated into mean monthly values based on monthly rainfall erosivity fractions derived from the original IMERG data. Global mean monthly rainfall erosivity was distinctly seasonal; erosivity peaked at ~ 200 MJ mm ha−1 h−1 month−1 in June–August over the Northern Hemisphere and ~ 700 MJ mm ha−1 h−1 month−1 in December–February over the Southern Hemisphere, contributing to over 60% of the annual rainfall erosivity over large areas in each hemisphere. Rainfall erosivity was ~ 4 times higher during the most erosive months than the least erosive months (December–February and June–August in the Northern and Southern Hemisphere, respectively). The latitudinal distributions of monthly and seasonal rainfall erosivity were highly heterogeneous, with the tropics showing the greatest erosivity. The intra-annual variability of monthly rainfall erosivity was particularly high within 10–30° latitude in both hemispheres. The monthly rainfall erosivity maps can be used for improving spatiotemporal modeling of soil erosion and planning of soil conservation measures.

An integrated modeling approach for estimating monthly global rainfall erosivity | Scientific Reports

Geospatial evaluation of the agricultural suitability and land use compatibility in Europe's temperate continental climate region
Geospatial evaluation of the agricultural suitability and land use compatibility in Europe's temperate continental climate region
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Land suitability assessment is used in conjunction with geographic information systems to spatially model diverse aspects of soil functions, having the potential to facilitate a sustainable increase in agricultural production, reduce land degradation, or aid humans in adapting to climate change. Compared to the existing datasets, this study provides a new higher resolution geospatial assessment of the agricultural land suitability for several crops and land uses in the temperate continental climate across Europe. To model the land suitability we used geospatial data depicting seventeen eco-pedological indicators (e.g. soil texture, pH, porosity, temperature, precipitation, slope). To evaluate how the land is utilized, the suitability maps have been spatially cross-tabulated with a crop map. Over the entire study area, wheat and barley showed significant suitable land in the southern part, potatoes, and sugar beet exhibited the highest extent of suitable land in the northern parts, while corn and sunflower exhibited a much lower extent of suitable land. Water table depth, precipitation, temperature, terrain slope, soil porosity, SOC, and topsoil texture emerged as the limiting factors for agricultural suitability in the study area. Our results show that the suitable arable land does not have space left for the expansion of crops, however, we have identified regions with extensive cultivation of wheat and corn on unsuitable land with the potential for cultivation of more suitable crops such as barley, sunflower, sugar beet, and potato. It seems that one action that can enhance agricultural practices in the study area is to better allocate each cultivated crop across more suitable lands.

Geospatial evaluation of the agricultural suitability and land use compatibility in Europe's temperate continental climate region - ScienceDirect

Benchmarking soil organic carbon (SOC) concentration provides more robust soil health assessment than the SOC/clay ratio at European scale
Benchmarking soil organic carbon (SOC) concentration provides more robust soil health assessment than the SOC/clay ratio at European scale
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Increasing soil organic carbon (SOC) confers benefits to soil health, biodiversity, underpins carbon sequestration and ameliorates land degradation. One recommendation is to increase SOC such that the SOC to clay ratio (SOC/clay) exceeds 1/13, yet normalising SOC levels based on clay alone gives misleading indications of soil structure and the potential to store additional carbon. Building on work by Poeplau & Don (2023) to benchmark observed against predicted SOC, we advance an alternative indicator: the ratio between observed and “typical” SOC (O/T SOC) for pan-European application. Here, “typical” SOC is the average concentration in different pedo-climate zones, PCZs (which, unlike existing SOC indicators, incorporate land cover and climate, alongside soil texture) across Europe, determined from mineral (<20 % organic matter) topsoils (0–20 cm) sampled during 2009–2018 in LUCAS, Europe's largest soil monitoring scheme (n = 19,855). Regression tree modelling derived 12 PCZs, with typical SOC values ranging 5.99–39.65 g kg−1. New index classes for comparison with SOC/clay grades were established from the quartiles of each PCZ's O/T SOC distribution; these were termed: “Low” (below the 25th percentile), “Intermediate” (between the 25th and 50th percentiles), “High” (between the 50th and 75th percentiles), and “Very high” (above the 75th percentile). Compared with SOC/clay, O/T SOC was less sensitive to clay content, land cover, and climate, less geographically skewed, and better reflected differences in soil porosity and SOC stock, supporting 2 EU Soil Health Mission objectives (consolidating SOC stocks; improving soil structure for crops and biota). These patterns held for 2 independent datasets, and O/T SOC grades were sensitive enough to reflect land management differences across several long-term field experiments. O/T SOC used in conjunction with several other physical, chemical and biological soil health indicators can help support the EU Soil Monitoring Law and achieve several United Nations Sustainable Development Goals.

Benchmarking soil organic carbon (SOC) concentration provides more robust soil health assessment than the SOC/clay ratio at European scale - ScienceDirect

Soil pollution in the European Union – An outlook
Soil pollution in the European Union – An outlook
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Soil pollution in the European Union (EU) is poorly quantified, because of several years of reduced attention and limited funding on soil research and monitoring. Moreover, issues such as different monitoring methodologies within Member States (MS), and quantification methods focused on pseudototal rather than the available fraction of pollutants, has been limiting our understanding of risk under soil pollution. Despite that, thanks to efforts from the scientific community, it was possible to achieve some progress, which is by far insufficient for the problem at hand. In the anticipation of future policy demands and towards a common strategy for tackling soil pollution in the EU, it seemed relevant to describe the limited knowledge and main uncertainties. Such analysis should provide evidence for the development of efficient policies, as well as updating current ones to better tackle the interdisciplinary of soil. This perspective provides our view on current knowledge on soil pollution at EU scale, by compiling the most updated assessments made at EU scale, identifying soil pollution drivers, impacts on health and the environment, and evaluating current state of knowledge. Allowing us to infer about current level of uncertainties and knowledge gaps and identify solutions through future research and policies. Our suggestions are in line with an increasing investment on research and innovation, but also more frequent updates of current legislation already tackling pollution and welcoming the new proposal for a Soil Monitoring Law as an important driver for soil knowledge development and implementation of a European monitoring system.

Soil pollution in the European Union – An outlook - ScienceDirect

Ecological risk assessment of heavy metals from application of sewage sludge on agricultural soils in Europe
Ecological risk assessment of heavy metals from application of sewage sludge on agricultural soils in Europe
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

The present European Union (EU) Sewage Sludge Directive (86/278/EEC) is undergoing modifications aimed at enhancing its applicability in the agricultural sector. The Directive's existing limit values for heavy metal concentrations in soils are in the process of being revised. However, to comprehensively understand their effects on EU agricultural lands, additional evaluations are necessary. This is particularly important given that ecological risk assessments are often performed on a site-specific basis, potentially overlooking broader regional implications. The main objective of the current work is to introduce a methodological approach to quantify the impact of sewage sludge (SS) application on agricultural soils in the EU and the United Kingdom. Concentrations of heavy metals (HMs) (Cd, Cu, Hg, Ni, Pb and Zn) in agricultural land from Land Use/Land Cover Area Frame Survey (LUCAS) 2009 topsoil database were used as a baseline. Maximum quantities of SS that can be safely applied to agricultural lands were obtained by a modeling procedure was used to determine the maximum safe quantities of SS that can be applied to agricultural lands for each country within the European Member States and the United Kingdom. Accumulation of HMs in soils was modelled by using a representative SS composition, distributed over 10 successive years at 5 Mg ha−1 year−1 rate. Ecological risk impact was assessed by using both the single ecological risk index (Er) and the integrated potential ecological risk index (RI). Maximum quantities of SS applied on agricultural soils in EU + UK were estimated to be 45 Mg ha−1 at the country level. We found that 19% of agricultural land (around 28,471,900 ha) in the EU + UK shows a higher RI than moderate risk after long time application of the representative SS. We show that the combination of the HM concentrations from the LUCAS topsoil survey and assumptions on the SS composition and soil HM partitioning can be used to define the actual and potential soil pollution rate in EU + UK. We demonstrate that the proposed methodology can be used by policymakers, farmers, regional authorities and other stakeholders, with possible adaptions based on local in-depth soil and SS knowledge.

Ecological risk assessment of heavy metals from application of sewage sludge on agricultural soils in Europe - Yunta - 2024 - European Journal of Soil Science - Wiley Online Library

A trait-based ecological perspective on the soil microbial antibiotic-related genetic machinery
A trait-based ecological perspective on the soil microbial antibiotic-related genetic machinery
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Antibiotic resistance crisis dictates the need for resistance monitoring and the search for new antibiotics. The development of monitoring protocols is hindered by the great diversity of resistance factors, while the “streetlight effect” denies the possibility of discovering novel drugs based on existing databases. In this study, we address these challenges using high-throughput environmental screening viewed from a trait-based ecological perspective. Through an in-depth analysis of the metagenomes of 658 topsoil samples spanning Europe, we explored the distribution of 241 prokaryotic and fungal genes responsible for producing metabolites with antibiotic properties and 485 antibiotic resistance genes. We analyzed the diversity of these gene collections at different levels and modeled the distribution of each gene across environmental gradients. Our analyses revealed several nonparallel distribution patterns of the genes encoding sequential steps of enzymatic pathways synthesizing large antibiotic groups, pointing to gaps in existing databases and suggesting potential for discovering new analogues of known antibiotics. We show that agricultural activity caused a continental-scale homogenization of microbial antibiotic-related machinery, emphasizing the importance of maintaining indigenous ecosystems within the landscape mosaic. Based on the relationships between the proportion of the genes in the metagenomes with the main predictors (soil pH, land cover type, climate temperature and humidity), we illustrate how the properties of chemical structures dictate the distribution of the genes responsible for their synthesis across environments. With this understanding, we propose general principles to facilitate the discovery of antibiotics, including principally new ones, establish abundance baselines for antibiotic resistance genes, and predict their dissemination.

A trait-based ecological perspective on the soil microbial antibiotic-related genetic machinery - ScienceDirect

Land use intensification homogenizes soil protist communities and alters their diversity across Europe
Land use intensification homogenizes soil protist communities and alters their diversity across Europe
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Soil protists have vital roles as major microbiome predators in soil functioning and plant performance. Protists are also suggested to be the most responsive microbial group to external changes, such as anthropogenic land use types. While protists were long used as models for biogeography such as to investigate if ‘everything is everywhere’ among microbes, their biogeography at the taxonomic level has never been explored in depth at the continental scale and linked to anthropogenic drivers. Here we evaluated how land-use types affect the diversity and structure of soil protist communities across 885 locations in Europe based on the European Commission's Land Use and Coverage Area frame Survey (LUCAS). We observed higher α-diversity of soil protists but lower community structure dissimilarity (β-diversity) in croplands compared with woodlands, with grasslands in an intermediate position. The diversity of protist groups with a broader spatial niche was higher in croplands, whereas taxa with a narrower niche increased in woodlands. The importance of climate factors on α-diversity variations reduced as land use intensity increased, but the opposite trend was observed for the effect of soil properties. Our study suggests that there is an interaction between land use type, environmental effects, and spatial niche attributes of soil protist groups, highlighting the importance of land-use type on the dynamics of protist communities.

https://www.sciencedirect.com/science/article/pii/S0038071724001482

Into the unknown: The role of post‐fire soil erosion in the carbon cycle
Into the unknown: The role of post‐fire soil erosion in the carbon cycle
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Wildfires directly emit 2.1 Pg carbon (C) to the atmosphere annually. The net effect of wildfires on the C cycle, however, involves many interacting source and sink processes beyond these emissions from combustion. Among those, the role of post-fire enhanced soil organic carbon (SOC) erosion as a C sink mechanism remains essentially unquantified. Wildfires can greatly enhance soil erosion due to the loss of protective vegetation cover and changes to soil structure and wettability. Post-fire SOC erosion acts as a C sink when off-site burial and stabilization of C eroded after a fire, together with the on-site recovery of SOC content, exceed the C losses during its post-fire transport. Here we synthesize published data on post-fire SOC erosion and evaluate its overall potential to act as longer-term C sink. To explore its quantitative importance, we also model its magnitude at continental scale using the 2017 wildfire season in Europe. Our estimations show that the C sink ability of SOC water erosion during the first post-fire year could account for around 13% of the C emissions produced by wildland fires. This indicates that post-fire SOC erosion is a quantitatively important process in the overall C balance of fires and highlights the need for more field data to further validate this initial assessment.

Global Change Biology | Environmental Change Journal | Wiley Online Library

Connections between soil microbes, land use and European climate: Insights for management practices
Connections between soil microbes, land use and European climate: Insights for management practices
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Soil microbial biomass and activity strongly depend on land use, vegetation cover, climate, and soil physicochemical properties. In most cases, this dependence was assessed by one-to-one correlations while by employing network analysis, information about network robustness and the balance between stochasticity and determinism controlling connectivity, was revealed. In this study, we further elaborated on the hypothesis of Smith et al. (2021) that cropland soils depended more on climate variables and therefore are more vulnerable to climate change. We used the same dataset with that of Smith et al. (2021) that contains seasonal microbial, climate and soil variables collected from 881 soil points representing the main land uses in Europe: forests, grassland, cropland. We examined complete (both direct and indirect relationships) and incomplete networks (only direct relationships) and recorded higher robustness in the former. Partial Least Square results showed that on average more than 45% of microbial attributes' variability was predicted by climate and habitat drivers denoting medium to strong effect of habitat filtering. Network architecture slightly affected by season or land use type; it followed the core/periphery structure with positive and negative interactions and no hub nodes. Microbial attributes (biomass, activity and their ratio) mostly belong to core block together with Soil Organic Carbon (SOC), while climate and soil variables to periphery block with the exception of cropland networks, denoting the higher dependence between microbial and climate variables in these latter. All complete networks appeared robust except for cropland and forest in summer, a finding that disagrees with our initial hypothesis about cropland. Networks' connectivity was controlled stronger by stochasticity in forest than in croplands. The lack of human interventions in forest soils increase habitat homogeneity enhancing the influence of stochastic agents such as microbial unlimited dispersal and/or stochastic extinction. The increased stochasticity implies the necessity for proactive management actions.

 

Connections between soil microbes, land use and European climate: Insights for management practices - ScienceDirect

How the EU Soil Observatory contributes to a stronger soil erosion community
How the EU Soil Observatory contributes to a stronger soil erosion community
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

New policy developments have emerged in relation to soil conservation after 2020. The Common Agricultural Policy (CAP) 2023–2027, the proposal for a Soil Monitoring Law and the mission ‘A Soil Deal for Europe’ have shaped a new policy framework at EU level, which requires updated assessments on soil erosion and land degradation. The EU Soil Observatory (EUSO) successfully organised a scientific workshop on ‘Soil erosion for the EU’ in June 2022. The event has seen the participation of more than 330 people from 63 countries, addressing important topics such as (i) management practices, (ii) large scale modelling, (iii) the importance of sediments in nutrient cycle, (vi) the role of landslides and (v) laying the foundations for early career scientists. As a follow up, among the 120 abstracts submitted in the workshop, we received fifteen manuscripts, out of which nine were selected for publication in the present special issue. In this editorial, we summarize the major challenges that the soil erosion research community faces in relation to supporting the increasing role of soils in the EU Green Deal.

How the EU Soil Observatory contributes to a stronger soil erosion community - ScienceDirect

Remaining loyal to our soil: a prospective integrated assessment of soil erosion on global food security
Remaining loyal to our soil: a prospective integrated assessment of soil erosion on global food security
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Soil loss by water erosion represents a key threat to land degradation worldwide. This study employs an integrated quantitative modelling approach to estimate the long-term global sustainability impacts of soil erosion. The global biophysical model estimates a mean increase of soil erosion rates of between 30-66% over the period 2015-2070 under alternative climate-economic scenarios, assuming different greenhouse gas concentration trajectories. In a subsequent step, projected soil erosion rates are converted into land productivity losses and inputted into an economic global simulation model to identify those regional hotspots where the greatest market tensions are expected to occur.The headline result is that soil erosion presents a major challenge to food security in vulnerable regions (Africa and some tropical regions). Indeed, for certain crops (particularly oilseeds) the threat of shortages is potentially significant. Secondly, exploring different long-term socioeconomic-environmental pathways quantitatively confirms the merits of sustainable management practises in coping with anticipated market and environmental stresses arising from soil erosion. Finally, free (and fair) trade is essential to allow less affected regions to expand (marginally) their production, thereby cushioning the market tensions that are expected to occur in more acutely affected areas of the world.

Remaining Loyal to Our Soil: A Prospective Integrated Assessment of Soil Erosion on Global Food Security by Martina Sartori, Emanuele Ferrari, Robert M'Barek, G. Philippidis, Kirsten Boysen-Urban, Pasquale Borrelli, Luca Montanarella, Panos Panagos :: SSRN

Soil bulk density assessment in Europe
Soil bulk density assessment in Europe
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

The topsoil Land Use and Cover Area frame Statistical survey (LUCAS) aims at collecting harmonised data about the state of soil health over the extent of European Union (EU). In the LUCAS 2018 survey, bulk density has been analysed for three depths, i.e., 0–10 cm = 6140 sites; 10–20 cm = 5684 sites and 20–30 cm =139 sites. The laboratory analysis and the assessment of the results conclude that the bulk density at 10–20 cm is 5–10% higher compared to 0–10 cm for all land uses except woodlands (20%). In the 0–20 cm depth, croplands have 1.5 times higher bulk density (mean: 1.26 g cm−3) compared to woodlands (mean: 0.83 g cm−3). The main driver for bulk density variation is the land use which implies that many existing pedotransfer rules have to be developed based on land use. This study applied a methodological framework using an advanced Cubist rule-based regression model to optimize the spatial prediction of bulk density in Europe. We spatialised the circa 6000 LUCAS samples and developed the high-resolution map (100 m) of bulk density for the 0–20 cm depth and the maps at 0–10 and 10–20 cm depth. The modelling results showed a very good prediction (R2: 0.66) of bulk density for the 0–20 cm depth which outperforms previous assessments. The bulk density maps can be used to estimate packing density which is a proxy to estimate soil compaction. Therefore, this work contributes to monitoring soil health and refine estimates on carbon and nutrients stocks in the EU topsoil.

Soil bulk density assessment in Europe - ScienceDirect

Including land management in a European carbon model with lateral transfer to the oceans
Including land management in a European carbon model with lateral transfer to the oceans
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

The use of cover crops (CCs) is a promising cropland management practice with multiple benefits, notably in reducing soil erosion and increasing soil organic carbon (SOC) storage. However, the current ability to represent these factors in land surface models remains limited to small scales or simplified and lumped approaches due to the lack of a sediment-carbon erosion displacement scheme. This precludes a thorough understanding of the consequences of introducing a CC into agricultural systems. In this work, this problem was addressed in two steps with the spatially distributed CE-DYNAM model.First, the historical effect of soil erosion, transport, and deposition on the soil carbon budget at a continental scale in Europe was characterized since the early industrial era, using reconstructed climate and land use forcings. Then, the impact of two distinct policy-oriented scenarios for the introduction of CCs were evaluated, covering the European cropping systems where surface erosion rates or nitrate susceptibility are critical. The evaluation focused on the increase in SOC storage and the export of particulate organic carbon (POC) to the oceans, compiling a continental-scale carbon budget. The results indicated that Europe exported 1.95 TgC/year of POC to the oceans in the last decade, and that CCs can contribute to reducing this amount while increasing SOC storage. Compared to the simulation without CCs, the additional rate of SOC storage induced by CCs peaked after 10 years of their adoption, followed by a decrease, and the cumulative POC export reduction stabilized after around 13 years. The findings indicate that the impacts of CCs on SOC and reduced POC export are persistent regardless of their spatial allocation adopted in the scenarios. Together, the results highlight the importance of taking the temporal aspect of CC adoption into account and indicate that CCs alone are not sufficient to meet the targets of the 4‰ initiative. Despite some known model limitations, which include the lack of feedback of erosion on the net primary productivity and the representation of carbon fluxes with an emulator, the current work constitutes the first approach to successfully couple a distributed routing scheme of eroded carbon to a land carbon model emulator at a reasonably high resolution and continental scale. SHORT ABSTRACT: A spatially distributed model coupling erosion, transport, and deposition to the carbon cycle was developed. Then, it was used to simulate the impact of cover crops on both erosion and carbon, to show that cover crops can simultaneously increase organic carbon storage and reduce particulate organic carbon export to the oceans. The results seemed persistent regardless of the spatial distribution of cover crops.

Including land management in a European carbon model with lateral transfer to the oceans - PubMed

Modeling arsenic in European topsoils with a coupled semiparametric (GAMLSS-RF) model for censored data
Modeling arsenic in European topsoils with a coupled semiparametric (GAMLSS-RF) model for censored data
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Arsenic (As) is a versatile heavy metalloid trace element extensively used in industrial applications. As is carcinogen, poses health risks through both inhalation and ingestion, and is associated with an increased risk of liver, kidney, lung, and bladder tumors. In the agricultural context, the repeated application of arsenical products leads to elevated soil concentrations, which are also affected by environmental and management variables. Since exposure to As poses risks, effective assessment tools to support environmental and health policies are needed. However, the most comprehensive soil As data available, the Land Use/Cover Area frame statistical Survey (LUCAS) database, contains severe limitations due to high detection limits. Although within International Organization for Standardization standards, the detection limits preclude the adoption of standard methodologies for data analysis. The present work focused on developing a new method to model As contamination in European soils using LUCAS soil samples. We introduce the GAMLSS-RF model, a novel approach that couples Random Forests with Generalized Additive Models for Location, Scale, and Shape. The semiparametric model can capture non-linear interactions among input variables while accommodating censored and non-censored observations and can be calibrated to include information from other campaign databases. After fitting and validating a spatial model, we produced European-scale As concentration maps at a 250 m spatial resolution and evaluated the patterns against reference values (i.e., two action levels and a background concentration). We found a significant variability of As concentration across the continent, with lower concentrations in Northern countries and higher concentrations in Portugal, Spain, Austria, France and Belgium. By overcoming limitations in existing databases and methodologies, the present approach provides an alternative way to handle highly censored data. The model also consists of a valuable probabilistic tool for assessing As contamination risks in soils, contributing to informed policy-making for environmental and health protection.

Modeling arsenic in European topsoils with a coupled semiparametric (GAMLSS-RF) model for censored data - PubMed

The LANDSUPPORT geospatial decision support system (S‐DSS) vision: Operational tools to implement sustainability policies in land planning and management
The LANDSUPPORT geospatial decision support system (S‐DSS) vision: Operational tools to implement sustainability policies in land planning and management
Resource Type: Maps & Documents, Documents, Publications in Journals
Year: 2024

Nowadays, there is contrasting evidence between the ongoing continuing and widespread environmental degradation and the many means to implement environmental sustainability actions starting from good policies (e.g. EU New Green Deal, CAP), powerful technologies (e.g. new satellites, drones, IoT sensors), large databases and large stakeholder engagement (e.g. EIP-AGRI, living labs). Here, we argue that to tackle the above contrasting issues dealing with land degradation, it is very much required to develop and use friendly and freely available web-based operational tools to support both the implementation of environmental and agriculture policies and enable to take positive environmental sustainability actions by all stakeholders. Our solution is the S-DSS LANDSUPPORT platform, consisting of a free web-based smart Geospatial CyberInfrastructure containing 15 macro-tools (and more than 100 elementary tools), co-designed with different types of stakeholders and their different needs, dealing with sustainability in agriculture, forestry and spatial planning. LANDSUPPORT condenses many features into one system, the main ones of which were (i) Web-GIS facilities, connection with (ii) satellite data, (iii) Earth Critical Zone data and (iv) climate datasets including climate change and weather forecast data, (v) data cube technology enabling us to read/write when dealing with very large datasets (e.g. daily climatic data obtained in real time for any region in Europe), (vi) a large set of static and dynamic modelling engines (e.g. crop growth, water balance, rural integrity, etc.) allowing uncertainty analysis and what if modelling and (vii) HPC (both CPU and GPU) to run simulation modelling ‘on-the-fly’ in real time. Two case studies (a third case is reported in the Supplementary materials), with their results and stats, covering different regions and spatial extents and using three distinct operational tools all connected to lower land degradation processes (Crop growth, Machine Learning Forest Simulator and GeOC), are featured in this paper to highlight the platform's functioning. Landsupport is used by a large community of stakeholders and will remain operational, open and free long after the project ends. This position is rooted in the evidence showing that we need to leave these tools as open as possible and engage as much as possible with a large community of users to protect soils and land.

Land Degradation & Development | Environmental & Soil Science Journal | Wiley Online Journal